BibTex

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@article{lkwxk17:bio,
author = "A. K.-Y. Leung and T.-P. Kwok and R. Wan and M. Xiao and P.-Y. Kwok and others",
journal = "Bioinformatics",
number = "3",
pages = "311--319",
title = "{OMBlast:} alignment tool for optical mapping using a seed-and-extend approach",
volume = "33",
year = "2017"}
 

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@inproceedings{wmc14:trec,
author = "R. Wan and J. H.-K. Man and T.-F. Chan",
booktitle = "Proc. 23rd Text Retrieval Conference ({TREC} 2014)",
publisher = "National Institute of Standards and Technology (NIST)",
title = "Query Modification through External Sources to Support Clinical Decisions",
year = "2014"}
 

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@article{lwycw13:bio,
author = "J.-W. Li and R. Wan and C.-S. Yu and N. N. Co and N. Wong and others",
journal = "Bioinformatics",
number = "5",
pages = "649--651",
title = "{ViralFusionSeq: Accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution}",
volume = "29",
year = "2013"}
 

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@Article{waa12:bio,
author = "R. Wan and V. N. Anh and K. Asai",
journal = "Bioinformatics",
number = "5",
pages = "628--635",
title = "{Transformations for the Compression of {FASTQ} Quality Scores of Next Generation Sequencing Data}",
volume = "28",
year = "2012"}
 

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@Article{ kwshf10:gr,
title = "Adaptive seeds tame genomic sequence comparison",
author = "S. M. Kie{\l}basa and R. Wan and K. Sato and P. Horton and M. C. Frith",
journal = "Genome Research",
year = "2010"}
 

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@InProceedings{ wa10:bibm,
title = "Sorting Next Generation Sequencing Data Improves Compression Effectiveness",
booktitle = "Proc. 2010 {IEEE} International Conference on Bioinformatics and Biomedicine (BIBM) -- Workshops and Posters",
author = "R. Wan and K. Asai",
pages = "567--572",
year = "2010"}
 

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@Article{ fwh10:nar,
title = "Incorporating sequence quality data into alignment improves {DNA} read mapping",
author = "M. C. Frith and R. Wan and P. Horton",
journal = "Nucleic Acids Research",
month = jan,
year = 2010}
 

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@Article{ wkhmh09:scfbm,
title = "{HAMSTER}: visualizing microarray experiments as a set of minimum spanning trees",
author = "R. Wan and L. Kiseleva and H. Harada and H. Mamitsuka and P. Horton",
journal = "Source Code for Biology and Medicine",
volume = "4",
number = "8",
year = "2009"}
 

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@InProceedings{ wam09:airs,
title = "Efficient Probabilistic Latent Semantic Analysis Through Parallelization",
booktitle = "Proc. 5th Asia Information Retrieval Symposium (AIRS 2009)",
series = "Lecture Notes in Computer Science",
author = "R. Wan and V. N. Anh and H. Mamitsuka",
pages = "432--443",
volume = "5839",
month = oct,
year = "2009",
comment = "Poster session"}
 

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@InBook{ wm09:incollection,
title = "Chapter 8:  Discovering Network Motifs in Protein Interaction Networks",
booktitle = "Biological Data Mining in Protein Interaction Networks",
author = "R. Wan and H. Mamitsuka",
editor = "X.-L. Li and S.-K. Ng",
publisher = "IGI Global",
pages = "117--143",
chapter = "8",
year = "2009",
isbn = "978-1-60566-398-2"}
 

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@InProceedings{ awm08:spire,
title = "Term Impacts as Normalized Term Frequencies for {BM25} Similarity Scoring",
booktitle = "Proc. 15th International Symposium on String Processing and Information Retrieval",
series = "LNCS",
author = "V. N. Anh and R. Wan and A. Moffat",
location = "Melbourne,
 Australia",
pages = "51--62",
volume = "5280",
month = nov,
year = "2008"}
 

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@InProceedings{ wwm08:ibsb,
title = "A Framework for Determining Outlying Microarray Experiments",
booktitle = "Proc. 8th International Workshop on Bioinformatics and Systems Biology (IBSB)",
series = "Genome Informatics",
author = "R. Wan and {\AA}. M. Wheelock and H. Mamitsuka",
location = "Berlin,
 Germany",
pages = "64--76",
volume = "20",
year = "2008"}
 

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@InProceedings{ wam07:trec,
title = "Passage Retrieval with Vector Space and Query-Level Aspect Models",
author = "R. Wan and V. N. Anh and H. Mamitsuka",
booktitle = "Proc. 16th Text Retrieval Conference ({TREC} 2007)",
series = "{NIST} Special Publication 500-274",
editor = "E. M. Voorhees and L. P. Buckland",
location = "Gaithersburg,
 MD",
month = dec,
year = 2007,
comment = "Year of publication is 2008."}
 

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@Article{ wm07:jasist,
title = "Block merging for off-line compression",
author = "R. Wan and A. Moffat",
journal = "Journal of the American Society for Information Science and Technology",
pages = "3--14",
volume = 58,
number = 1,
year = 2007}
 

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@InProceedings{ watm06:trec,
title = "Combining Vector-Space and Word-based Aspect Models for Passage Retrieval",
author = "R. Wan and V. N. Anh and I. Takigawa and H. Mamitsuka",
booktitle = "Proc. 15th Text Retrieval Conference ({TREC} 2006)",
series = "{NIST} Special Publication 500-272",
editor = "E. M. Voorhees and L. P. Buckland",
location = "Gaithersburg,
 MD",
month = oct,
year = 2006,
comment = "Year of publication is 2007."}
 

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@InProceedings{ wtm06:vdmb,
title = "Applying {G}aussian Distribution-Dependent Criteria to Decision Trees for High-Dimensional Microarray Data",
booktitle = "Proc. Data Mining in Bioinformatics (VDMB) Workshop at the 32nd International Conference on Very Large Data Bases",
series = "LNBI",
author = "R. Wan and I. Takigawa and H. Mamitsuka",
editor = "M. M. Dalkilic and S. Kim and J. Yang",
publisher = "Springer-Verlag",
location = "Seoul,
 South Korea",
pages = "40--49",
volume = 4316,
month = sep,
year = 2006,
comment = "September 11,
 2006"}
 

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@InProceedings{ wma05:sac,
title = "Cleaning Microarray Expression Data using {M}arkov {R}andom {F}ields Based on Profile Similarity",
booktitle = "Proc. 20th {ACM} Symposium on Applied Computing",
author = "R. Wan and H. Mamitsuka and K. F. Aoki",
address = "Sante Fe,
 New Mexico,
 USA",
pages = "206--207",
month = mar,
year = 2005}
 

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@InProceedings{ wm03:adcs,
title = "Evaluating Statistically Generated Phrases",
booktitle = "Proc. 8th Australasian Document Computing Symposium",
author = "R. Wan and A. Moffat",
editor = "P. Bruza and J. Thom",
publisher = "{CSIRO} {ICT} Centre",
location = "Canberra,
 Australia",
pages = "67--70",
month = dec,
year = 2003,
comment = "Conference date: December 15"}
 

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@PhDThesis{ wan03:phd,
title = "Browsing and Searching Compressed Documents",
author = "R. Wan",
school = "University of Melbourne",
address = "Australia",
month = dec,
year = 2003}
 

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@InProceedings{ wm02:cpm,
title = "Block Merging for Off-Line Compression",
author = "R. Wan and A. Moffat",
booktitle = "Proc. 13th Annual Symposium on Combinatorial Pattern Matching",
editor = "A. Apostolico and M. Takeda",
publisher = "Springer-Verlag",
location = "Fukuoka,
 Japan",
month = jul,
year = 2002,
pages = "32--41",
comment = "Conference date: July 3 - 5,
 2002"}
 

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@InProceedings{ mw01:spire,
title = "{R}e-{S}tore: A system for compressing,
 browsing,
 and searching large documents",
booktitle = "Proc. 8th International Symposium on String Processing and Information Retrieval",
author = "A. Moffat and R. Wan",
publisher = "{IEEE} Computer Society",
location = "Laguna de San Rafael,
 Chile",
pages = "162--174",
month = nov,
year = 2001,
note = "Invited talk"}
 

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@InProceedings{ wm01:sigir,
title = "Interactive Phrase Browsing Within Compressed Text",
author = "R. Wan and A. Moffat",
pages = "410--411",
booktitle = "Proc. 24th Annual International {ACM} {SIGIR} Conference on Research and Development in Information Retrieval",
editor = "W. B. Croft and D. J. Harper and D. H. Kraft and J. Zobel",
publisher = "ACM Press",
location = "New Orleans,
 USA",
month = sep,
year = 2001,
comment = "York Press for {ACM} Press Conference date: September 9 - 13"}
 

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@InProceedings{ wm01:adc,
title = "Effective Compression for the Web: Exploiting Document Linkages",
booktitle = "Proc. 12th Australasian Database Conference",
author = "R. Wan and A. Moffat",
editor = "M. E. Orlowska and J. F. Roddick",
publisher = "IEEE Computer Society Press",
location = "Gold Coast,
 Australia",
address = "Los Alamitos,
 USA",
pages = "68--75",
month = feb,
year = 2001}
 

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